Index A | B | C | D | E | F | G | I | L | M | N | O | P | R | S | T | V A ANGLE (pyfrag_plotter.pyfrag_object.AvailableTerms attribute) angle (pyfrag_plotter.pyfrag_object.PyFragResultsObject attribute), [1] atom (pyfrag_plotter.pyfrag_object.VDD attribute) atom1 (pyfrag_plotter.pyfrag_object.BondAngle attribute) (pyfrag_plotter.pyfrag_object.Bondlength attribute) (pyfrag_plotter.pyfrag_object.DihedralAngle attribute) atom2 (pyfrag_plotter.pyfrag_object.BondAngle attribute) (pyfrag_plotter.pyfrag_object.Bondlength attribute) (pyfrag_plotter.pyfrag_object.DihedralAngle attribute) atom3 (pyfrag_plotter.pyfrag_object.DihedralAngle attribute) AvailableTerms (class in pyfrag_plotter.pyfrag_object) B BondAngle (class in pyfrag_plotter.pyfrag_object) bondangle (pyfrag_plotter.pyfrag_object.BondAngle attribute) Bondlength (class in pyfrag_plotter.pyfrag_object) BONDLENGTH (pyfrag_plotter.pyfrag_object.AvailableTerms attribute) bondlength (pyfrag_plotter.pyfrag_object.Bondlength attribute) (pyfrag_plotter.pyfrag_object.PyFragResultsObject attribute), [1] C colours (pyfrag_plotter.plot.plotter.PlotInfo attribute), [1] Config (class in pyfrag_plotter.config.config_handler) config_parser (pyfrag_plotter.config.config_handler.Config attribute) content (pyfrag_plotter.config.config_handler.Config property) create_pyfrag_object_from_dir() (in module pyfrag_plotter.pyfrag_object) create_pyfrag_object_from_processed_files() (in module pyfrag_plotter.pyfrag_object) D dataframe (pyfrag_plotter.pyfrag_object.PyFragResultsObject attribute), [1] DIHEDRAL (pyfrag_plotter.pyfrag_object.AvailableTerms attribute) dihedral (pyfrag_plotter.pyfrag_object.PyFragResultsObject attribute), [1] DihedralAngle (class in pyfrag_plotter.pyfrag_object) dihedralangle (pyfrag_plotter.pyfrag_object.DihedralAngle attribute) DISP (pyfrag_plotter.pyfrag_object.AvailableTerms attribute) E ELSTAT (pyfrag_plotter.pyfrag_object.AvailableTerms attribute) ENERGY_TOTAL (pyfrag_plotter.pyfrag_object.AvailableTerms attribute) extra_strain (pyfrag_plotter.pyfrag_object.PyFragResultsObject attribute), [1] F frag (pyfrag_plotter.pyfrag_object.OrbitalEnergy attribute) (pyfrag_plotter.pyfrag_object.Population attribute) frag1_irrep (pyfrag_plotter.pyfrag_object.Overlap attribute) frag1_orb (pyfrag_plotter.pyfrag_object.Overlap attribute) FRAG1_STRAIN (pyfrag_plotter.pyfrag_object.AvailableTerms attribute) frag2_irrep (pyfrag_plotter.pyfrag_object.Overlap attribute) frag2_orb (pyfrag_plotter.pyfrag_object.Overlap attribute) FRAG2_STRAIN (pyfrag_plotter.pyfrag_object.AvailableTerms attribute) G get() (pyfrag_plotter.config.config_handler.Config method) get_calculation_index_closest_to_irc_point() (pyfrag_plotter.pyfrag_object.PyFragResultsObject method) get_data_of_key() (pyfrag_plotter.pyfrag_object.PyFragResultsObject method) get_peak_index() (pyfrag_plotter.pyfrag_object.PyFragResultsObject method) get_plot_labels() (pyfrag_plotter.pyfrag_object.PyFragResultsObject method) get_pyfrag_files() (in module pyfrag_plotter.input.pyfrag_files) get_x_axis() (pyfrag_plotter.pyfrag_object.PyFragResultsObject method) I initialize_pyfrag_plotter() (in module pyfrag_plotter) INT (pyfrag_plotter.pyfrag_object.AvailableTerms attribute) interpolate_data() (in module pyfrag_plotter.interpolate) interpolate_plot() (in module pyfrag_plotter.interpolate) irc_coord (pyfrag_plotter.plot.plotter.PlotInfo attribute), [1] irc_coord_label (pyfrag_plotter.plot.plotter.PlotInfo attribute), [1] Irrep (class in pyfrag_plotter.pyfrag_object) irrep (pyfrag_plotter.pyfrag_object.Irrep attribute) (pyfrag_plotter.pyfrag_object.OrbitalEnergy attribute) (pyfrag_plotter.pyfrag_object.Population attribute) (pyfrag_plotter.pyfrag_object.PyFragResultsObject attribute), [1] IRREPOI (pyfrag_plotter.pyfrag_object.AvailableTerms attribute) L label (pyfrag_plotter.pyfrag_object.Property property) label() (pyfrag_plotter.pyfrag_object.BondAngle method) (pyfrag_plotter.pyfrag_object.Bondlength method) (pyfrag_plotter.pyfrag_object.DihedralAngle method) (pyfrag_plotter.pyfrag_object.Irrep method) (pyfrag_plotter.pyfrag_object.OrbitalEnergy method) (pyfrag_plotter.pyfrag_object.Overlap method) (pyfrag_plotter.pyfrag_object.Population method) (pyfrag_plotter.pyfrag_object.VDD method) line_styles (pyfrag_plotter.plot.plotter.PlotInfo attribute), [1] M module pyfrag_plotter pyfrag_plotter.config pyfrag_plotter.config.config_handler pyfrag_plotter.config.validate pyfrag_plotter.errors pyfrag_plotter.input pyfrag_plotter.input.pyfrag_files pyfrag_plotter.input.read_inputfile pyfrag_plotter.input.read_resultsfile pyfrag_plotter.interpolate pyfrag_plotter.plot pyfrag_plotter.plot.plot_details pyfrag_plotter.plot.plotter pyfrag_plotter.processing_funcs pyfrag_plotter.pyfrag_object N name (pyfrag_plotter.plot.plotter.Plotter attribute) (pyfrag_plotter.pyfrag_object.PyFragResultsObject attribute), [1] O objects (pyfrag_plotter.plot.plotter.Plotter attribute) OI (pyfrag_plotter.pyfrag_object.AvailableTerms attribute) orbital (pyfrag_plotter.pyfrag_object.OrbitalEnergy attribute) (pyfrag_plotter.pyfrag_object.Population attribute) OrbitalEnergy (class in pyfrag_plotter.pyfrag_object) ORBITALENERGY (pyfrag_plotter.pyfrag_object.AvailableTerms attribute) orbitalenergy (pyfrag_plotter.pyfrag_object.PyFragResultsObject attribute), [1] Overlap (class in pyfrag_plotter.pyfrag_object) OVERLAP (pyfrag_plotter.pyfrag_object.AvailableTerms attribute) overlap (pyfrag_plotter.pyfrag_object.PyFragResultsObject attribute), [1] overwrite_config() (pyfrag_plotter.config.config_handler.Config method) P path (pyfrag_plotter.plot.plotter.Plotter attribute) PAULI (pyfrag_plotter.pyfrag_object.AvailableTerms attribute) peak_type (pyfrag_plotter.plot.plotter.PlotInfo attribute), [1] plot_arbitrary_keys() (pyfrag_plotter.plot.plotter.Plotter method) plot_asm() (pyfrag_plotter.plot.plotter.Plotter method) plot_eda() (pyfrag_plotter.plot.plotter.Plotter method) plot_extra_strain() (pyfrag_plotter.plot.plotter.Plotter method) plot_info (pyfrag_plotter.plot.plotter.Plotter attribute) plot_logger() (in module pyfrag_plotter.plot.plotter) plot_population() (pyfrag_plotter.plot.plotter.Plotter method) PlotInfo (class in pyfrag_plotter.plot.plotter) Plotter (class in pyfrag_plotter.plot.plotter) Population (class in pyfrag_plotter.pyfrag_object) POPULATION (pyfrag_plotter.pyfrag_object.AvailableTerms attribute) population (pyfrag_plotter.pyfrag_object.PyFragResultsObject attribute), [1] process_results_file() (in module pyfrag_plotter.processing_funcs) Property (class in pyfrag_plotter.pyfrag_object) pyfrag_plotter module pyfrag_plotter.config module pyfrag_plotter.config.config_handler module pyfrag_plotter.config.validate module pyfrag_plotter.errors module pyfrag_plotter.input module pyfrag_plotter.input.pyfrag_files module pyfrag_plotter.input.read_inputfile module pyfrag_plotter.input.read_resultsfile module pyfrag_plotter.interpolate module pyfrag_plotter.plot module pyfrag_plotter.plot.plot_details module pyfrag_plotter.plot.plotter module pyfrag_plotter.processing_funcs module pyfrag_plotter.pyfrag_object module PyFragConfigError PyFragConfigValidationError PyFragError PyFragInputError PyFragInterpolationError PyFragResultsObject (class in pyfrag_plotter.pyfrag_object) PyFragResultsObjectError PyFragResultsProcessingError PyFragResultsProcessingWarning R read_inputfile() (in module pyfrag_plotter.input.read_inputfile) read_results_file() (in module pyfrag_plotter.input.read_resultsfile) remove_dispersion_term() (in module pyfrag_plotter.processing_funcs) remove_duplicate_x_values() (in module pyfrag_plotter.interpolate) remove_duplicate_x_values_dataframe() (in module pyfrag_plotter.processing_funcs) remove_outliers() (in module pyfrag_plotter.processing_funcs) replace_overlapping_keys() (in module pyfrag_plotter.plot.plot_details) S sections (pyfrag_plotter.config.config_handler.Config property) set_axes_details() (in module pyfrag_plotter.plot.plot_details) set_figure_details() (in module pyfrag_plotter.plot.plot_details) standard_plot_routine() (pyfrag_plotter.plot.plotter.Plotter method) STRAIN_TOTAL (pyfrag_plotter.pyfrag_object.AvailableTerms attribute) T trim_data() (in module pyfrag_plotter.processing_funcs) V validate_config() (pyfrag_plotter.config.config_handler.Config method) validate_config_key() (in module pyfrag_plotter.config.validate) VDD (class in pyfrag_plotter.pyfrag_object) (pyfrag_plotter.pyfrag_object.AvailableTerms attribute) vdd (pyfrag_plotter.pyfrag_object.PyFragResultsObject attribute), [1]